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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18704393_18706974_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18704393 - 18706974
Intron Length:
2582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TCAGCCTGGATT
Flanking Amino Acid:
KINLTEARVQVWFQNRRAKW
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
77.8
0.62
0.9
69.1
37
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
53.5
0.19
1.6
68.12
43.2

Associated Gene:

Gene:
DRGX
Ensembl Gene ID:
ENSAPLG00000016357
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017069
18693620 - 18720290
26671