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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18724187_18725837_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18724187 - 18725837
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCTTTCTGAACC
Flanking Amino Acid:
RSSSFVPSSTKLNPAKDDTL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69.1
0.43
1
63
42.1
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
66
0.48
1.5
70.43
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034986
18722361 - 18728608
6248