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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18727361_18728119_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18727361 - 18728119
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTACTGTAATA
Flanking Amino Acid:
ARSEGQHFCKVELYELLEGG
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
76.2
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.9
0.6
1
75.4
38.6
Minor 5ss
32.1
-2
3.1
40.6
45.6
Minor BPS
52.5
0.08
2
67.24
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028230
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034986
18722361 - 18728608
6248