Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18737723_18738328_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18737723 - 18738328

Intron Length:

606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

TCCTCCTTCACC

Flanking Amino Acid:

YVLEKLFKKSGVHSVMKHDA

Intron Amino Acid Position:

1278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

1.1

85.2

32.2

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

70.1

0.45

64.8

41.3

Minor 5ss

44.2

-0.6

3.3

66.9

44.4

Minor BPS

68.3

0.56

1.8

73.91

43.5

Associated Gene:

Gene:

ERCC6

Ensembl Gene ID:

ENSAPLG00000016335

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024176

18736301 - 18782178

45878

ENSAPLT00000022361

18736301 - 18782178

45878

ENSAPLT00000017049

18736301 - 18782178

45878