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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18739288_18741123_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18739288 - 18741123
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATGCACA
Flanking Amino Acid:
AGTIEEKIYHRQIFKQFLTN
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.3
74.1
38.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
28.9
-2.4
2.6
32.6
42
Minor BPS
49.6
-0
2.2
70.68
40.9

Associated Gene:

Gene:
ERCC6
Ensembl Gene ID:
ENSAPLG00000016335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024176
18736301 - 18782178
45878
ENSAPLT00000022361
18736301 - 18782178
45878
ENSAPLT00000017049
18736301 - 18782178
45878