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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18743014_18745780_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18743014 - 18745780
Intron Length:
2767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
CCTATCACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAACT
Flanking Amino Acid:
VYQILSGDMQMLQILEAFVR
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
65.3
0.34
1
59.1
35.6
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
82.2
1.09
1.4
96.16
28.6

Associated Gene:

Gene:
ERCC6
Ensembl Gene ID:
ENSAPLG00000016335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022361
18736301 - 18782178
45878