About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18749506_18756171_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18749506 - 18756171
Intron Length:
6666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGCTCTGTTACT
Flanking Amino Acid:
HETGSYTNKKVKLIREIASC
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
48.9
-0
2.3
72.3
44.7

Associated Gene:

Gene:
ERCC6
Ensembl Gene ID:
ENSAPLG00000016335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022361
18736301 - 18782178
45878
ENSAPLT00000017049
18736301 - 18782178
45878
ENSAPLT00000024176
18736301 - 18782178
45878