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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18763670_18773412_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18763670 - 18773412
Intron Length:
9743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTATAACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTTTTCTATT
Flanking Amino Acid:
GDEDYYKQRLRRWQKERLKD
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1.1
76.5
38.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
66.7
0.38
1
57
43.4
Minor 5ss
33.2
-1.9
2.8
43.4
43.5
Minor BPS
55.1
0.24
1.8
79.15
37.3

Associated Gene:

Gene:
ERCC6
Ensembl Gene ID:
ENSAPLG00000016335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024176
18736301 - 18782178
45878
ENSAPLT00000022361
18736301 - 18782178
45878
ENSAPLT00000017049
18736301 - 18782178
45878