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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18776172_18779237_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18776172 - 18779237
Intron Length:
3066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTATCTAATT
Flanking Amino Acid:
DSVKRQKYNKEQQLKKINAK
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
76
35
Major BPS
100
1.24
0.5
100
0
Major PPT
72.1
0.5
1.1
69.7
40.1
Minor 5ss
29.7
-2.3
2.6
34.2
41.1
Minor BPS
51.9
0.14
1.8
71.88
39.3

Associated Gene:

Gene:
ERCC6
Ensembl Gene ID:
ENSAPLG00000016335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022361
18736301 - 18782178
45878
ENSAPLT00000017049
18736301 - 18782178
45878
ENSAPLT00000024176
18736301 - 18782178
45878