About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18779359_18781702_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18779359 - 18781702
Intron Length:
2344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TAGAGCTGAATA
Flanking Amino Acid:
KEYQLVLDDLRSCTSSLKQI
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
48
-0.1
1.9
58.23
41.3

Associated Gene:

Gene:
ERCC6
Ensembl Gene ID:
ENSAPLG00000016335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024176
18736301 - 18782178
45878
ENSAPLT00000022361
18736301 - 18782178
45878
ENSAPLT00000017049
18736301 - 18782178
45878