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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1880665_1928095_R

Intron Information:

Intron Rank:
143220
Intron Class:
major
Intron Phase:
Intron Coordinates:
1880665 - 1928095
Intron Length:
47431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.1
0.63
0.9
71.2
38.5
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
57
0.2
1.8
72.44
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042862
1880652 - 1996785
116134