Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18890574_18891848_R

Intron Information:

Intron Rank:

135482

Intron Class:

major

Intron Phase:

Intron Coordinates:

18890574 - 18891848

Intron Length:

1275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTCGG

5'SS Class:

major

3'SS Sequence:

CCTGCTTTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TATAATATAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

1.2

63.6

48.1

Major BPS

0.72

78.4

31.2

Major PPT

72.9

0.52

72.1

37.9

Minor 5ss

39.2

-1.2

2.9

50.5

45.8

Minor BPS

47.2

-0.3

1.8

55.43

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020320

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024365

18890422 - 18892230

1809