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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_18892285_18913326_R

Intron Information:

Intron Rank:
135481
Intron Class:
major
Intron Phase:
Intron Coordinates:
18892285 - 18913326
Intron Length:
21042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
GAATCCCTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
87
0.83
0.7
80.6
31.4
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
61.4
0.44
1.7
75.1
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020320
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018295
18890957 - 18913341
22385