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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19147747_19151043_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19147747 - 19151043
Intron Length:
3297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAA
U12 Branch Point Sequence:
AGGGACTGAACT
Flanking Amino Acid:
CRLLGISTAAVLIGVGVETL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
56.6
0.16
1.2
49.3
38
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
49.4
0.03
1.8
65.37
44.5

Associated Gene:

Gene:
TMEM72
Ensembl Gene ID:
ENSAPLG00000030711
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028231
19146433 - 19153943
7511