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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19151597_19152296_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19151597 - 19152296
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTTAT
U12 Branch Point Sequence:
GGTGCCTTATCC
Flanking Amino Acid:
FISLFLEMCFTYEPDSLAHA
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
61.1
0.28
1.3
53.6
43.8
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
60.1
0.3
1.8
67.99
43.2

Associated Gene:

Gene:
TMEM72
Ensembl Gene ID:
ENSAPLG00000030711
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028231
19146433 - 19153943
7511