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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19171727_19172860_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19171727 - 19172860
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
ACTTCTGCAATC
Flanking Amino Acid:
AVDPEALMNINEIITYKGYP
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
85.3
0.79
0.6
81.1
23.9
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
47.3
-0.2
2.1
60.26
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016296
19169968 - 19182111
12144