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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19172979_19173726_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19172979 - 19173726
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTC
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCTGATTT
Flanking Amino Acid:
PDGIQNQRNPVMKPAVFLQH
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
67.4
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
39.6
-1.2
3.6
58.4
46.5
Minor BPS
58.1
0.33
1.7
77.22
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016296
19169968 - 19182111
12144