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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19174431_19175158_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19174431 - 19175158
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTCTTATCA
Flanking Amino Acid:
YIGYSQGTTIAFIAFSTMPE
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
78.8
31.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.7
85
29.6
Minor 5ss
41
-1
2.8
53.4
43.8
Minor BPS
71.3
0.67
1.5
79.75
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016296
19169968 - 19182111
12144