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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19175296_19177435_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19175296 - 19177435
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACATTCTTAAAT
Flanking Amino Acid:
LLYLPEKMLRGLLGKREFFP
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
68.3
0.65
1.4
76.23
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016296
19169968 - 19182111
12144