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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19178515_19180000_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19178515 - 19180000
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTAGTG
5'SS Class:
major
3'SS Sequence:
TTCATCCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTACCC
Flanking Amino Acid:
SVQNIVHWSQEAHLGKFQAY
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
62.9
41.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
69.9
0.45
0.9
63.5
38
Minor 5ss
33
-1.9
3.6
47.2
48.1
Minor BPS
50.1
-0
2.1
68.56
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016296
19169968 - 19182111
12144