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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19181527_19181619_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19181527 - 19181619
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
CCCTCTGCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
GTAGCCATACCT
Flanking Amino Acid:
DFIWGLDAPLSGSFPPSSAF
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
72.7
38.2
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
65.6
0.35
0.8
60
29.8
Minor 5ss
47.4
-0.3
2.5
60.3
44.3
Minor BPS
49.2
0.02
2
70.68
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015611
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016296
19169968 - 19182111
12144