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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19189047_19189569_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19189047 - 19189569
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TGGCTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTATATTAACG
Flanking Amino Acid:
HRNPEDFMNVSEIIRYHGYP
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
73.5
37.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
71.6
0.49
0.9
65.1
36.4
Minor 5ss
44.5
-0.6
2.9
64.2
41.4
Minor BPS
65.3
0.34
1.7
73.21
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001900
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024540
19188777 - 19197140
8364