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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19189685_19190078_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19189685 - 19190078
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACAT
5'SS Class:
major
3'SS Sequence:
TAATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AATACTTTAATT
Flanking Amino Acid:
IPSGRNMQNTGKKPAVFLQH
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
69.4
36.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85
0.79
0.9
77.3
41.3
Minor 5ss
34.3
-1.8
3.1
46.9
48.4
Minor BPS
72.4
0.78
1.2
80.41
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001900
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024540
19188777 - 19197140
8364