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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19190970_19192249_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19190970 - 19192249
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACTAACT
Flanking Amino Acid:
YVGHSEGTASGFIAFSTYPE
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.2
0.7
0.8
76.5
32.1
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
64.8
0.54
2
86.18
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001900
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024540
19188777 - 19197140
8364