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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19192387_19192971_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19192387 - 19192971
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TCCCTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AAGTATTGCACT
Flanking Amino Acid:
IAHLPPALLRLTLGWKGTMH
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.4
41.9
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
81
0.7
0.7
79.8
25.6
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
44.5
-0.3
2
61.39
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001900
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024540
19188777 - 19197140
8364