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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19193113_19194529_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19193113 - 19194529
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ACCTTTATAACA
Flanking Amino Acid:
AGGNIQNLNTSRTDALVAHS
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.7
40.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
82.1
0.72
0.8
73.4
37.1
Minor 5ss
36.5
-1.5
2.7
44.8
42.5
Minor BPS
53.9
0.12
1.6
61.52
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001900
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024540
19188777 - 19197140
8364