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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19194602_19196377_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19194602 - 19196377
Intron Length:
1776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACTG
5'SS Class:
major
3'SS Sequence:
AAAATATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATCT
Flanking Amino Acid:
SVQNIIHWHQISEAGQFQAY
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
61.4
43.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
63
0.29
1
54.6
43.8
Minor 5ss
41
-1
3.2
56
48.1
Minor BPS
58.9
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001900
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024540
19188777 - 19197140
8364