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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19200389_19201482_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19200389 - 19201482
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TGTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAAACTAAAAT
Flanking Amino Acid:
AGADVNATDFSGSTALHYAC
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
61.8
42.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
84.9
0.79
0.7
82.1
29.9
Minor 5ss
34.7
-1.7
3.3
46.1
43.5
Minor BPS
47.4
-0.1
1.9
65.76
43.6

Associated Gene:

Gene:
ANKRD22
Ensembl Gene ID:
ENSAPLG00000001838
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001890
19199521 - 19208033
8513