Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19213796_19215657_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

19213796 - 19215657

Intron Length:

1862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCACACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

TGCTCTTTCACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

82.3

32.2

Major BPS

77.7

0.69

30.2

Major PPT

76.8

0.6

0.8

72.2

31.4

Minor 5ss

40.5

-1.1

2.8

44.2

Minor BPS

63.1

0.4

1.8

71.5

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017704

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026541

19213349 - 19225522

12174

ENSAPLT00000001940

19213349 - 19226505

13157