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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19225271_19226271_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19225271 - 19226271
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
CATGCACTAAGG
Flanking Amino Acid:
LKENMKKYNQPTPPAYNIER
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
69.1
0.48
1
70
32.1
Major PPT
84.7
0.78
0.7
79.6
25.9
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
41
-0.8
2.2
46.21
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017704
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001940
19213349 - 19226505
13157