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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19244215_19244858_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19244215 - 19244858
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ACCCCACCTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TCTACCCTACCC
Flanking Amino Acid:
AVPEKQVIIKKLKEVAFPRT
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.7
36.7
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
55.4
0.12
1
52.7
29.7
Minor 5ss
38.9
-1.2
3.6
54.8
49.4
Minor BPS
51.4
0.02
2
67.97
43.5

Associated Gene:

Gene:
STAMBPL1
Ensembl Gene ID:
ENSAPLG00000002723
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038823
19233713 - 19253594
19882
ENSAPLT00000002766
19241697 - 19253131
11435