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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19248509_19255367_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
19248509 - 19255367
Intron Length:
6859

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACC|GCAAGTGCT
5'SS Class:
weak_major
3'SS Sequence:
TATTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
YDEAGPSIVHQLFTYSMQS*
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.1
0.14
2.1
76.3
38.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
92.5
0.96
0.7
87.8
29.2
Minor 5ss
26.9
-2.7
4.1
46.2
42.2
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
ACTA2
Ensembl Gene ID:
ENSAPLG00000002915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006300
19248480 - 19260821
12342