Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19249234_19251575_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19249234 - 19251575

Intron Length:

2342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTGAGTTCT

5'SS Class:

major

3'SS Sequence:

TTTTGCTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

CAATAAATAACA

Flanking Amino Acid:

IAIVCSPKHNDTGIFRLTNA

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

71.2

35.2

Major BPS

65.7

0.39

71.3

30.3

Major PPT

0.88

0.7

36.6

Minor 5ss

38.7

-1.3

2.9

47.2

42.3

Minor BPS

45.7

-0.3

57.26

40.9

Associated Gene:

Gene:

STAMBPL1

Ensembl Gene ID:

ENSAPLG00000002723

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038823

19233713 - 19253594

19882

ENSAPLT00000002766

19241697 - 19253131

11435