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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19251676_19252990_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19251676 - 19252990
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATGCAACA
Flanking Amino Acid:
PHTKDPRLFNISHAVIRKA*
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.6
0.75
0.7
80.6
24.7
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
42.5
-0.5
2.2
57
42.4

Associated Gene:

Gene:
STAMBPL1
Ensembl Gene ID:
ENSAPLG00000002723
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002766
19241697 - 19253131
11435