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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19251676_19253287_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19251676 - 19253287
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AATGCATTGATT
Flanking Amino Acid:
PHTKDPRLFNPCTHVVGKDI
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
54.7
0.23
1.7
71.3
39.7

Associated Gene:

Gene:
STAMBPL1
Ensembl Gene ID:
ENSAPLG00000002723
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038823
19233713 - 19253594
19882