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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19256456_19257386_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19256456 - 19257386
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
GTAACTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATGTAACT
Flanking Amino Acid:
PETLFQPSFIGMESAGIHET
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
40.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
63.6
0.31
0.9
54.9
41
Minor 5ss
38.3
-1.3
3.1
46.2
44.4
Minor BPS
48.4
-0
2.2
72
45.3

Associated Gene:

Gene:
ACTA2
Ensembl Gene ID:
ENSAPLG00000002915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021302
19255354 - 19264070
8717
ENSAPLT00000006300
19248480 - 19260821
12342
ENSAPLT00000002970
19255192 - 19263452
8261