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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19258160_19258674_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19258160 - 19258674
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
AATTTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTATCTTAATT
Flanking Amino Acid:
PKANREKMTQIMFETFNVPA
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.65
0.9
75.3
38.6
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
77
0.92
1.1
86.8
32.4

Associated Gene:

Gene:
ACTA2
Ensembl Gene ID:
ENSAPLG00000002915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021302
19255354 - 19264070
8717
ENSAPLT00000006300
19248480 - 19260821
12342
ENSAPLT00000002970
19255192 - 19263452
8261