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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19258786_19259249_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19258786 - 19259249
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
CCATTGCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCTTCTTCCATT
Flanking Amino Acid:
ILTLKYPMEKIWHHSFYNEL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
65
0.37
1.3
76.1
38
Major PPT
69.1
0.43
0.9
65.4
35.9
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
48.7
-0
2
67.06
44.8

Associated Gene:

Gene:
ACTA2
Ensembl Gene ID:
ENSAPLG00000002915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021302
19255354 - 19264070
8717
ENSAPLT00000006300
19248480 - 19260821
12342
ENSAPLT00000002970
19255192 - 19263452
8261