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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19259379_19260649_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19259379 - 19260649
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGAAC
5'SS Class:
major
3'SS Sequence:
TGTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
TTTGTGTTATTT
Flanking Amino Acid:
PSIVGRPRHQGVMVGMGQKD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71
34.3
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
82
0.72
0.8
76.7
37.2
Minor 5ss
27.2
-2.6
3
33.5
42
Minor BPS
48.3
-0
2.3
74.56
43.3

Associated Gene:

Gene:
ACTA2
Ensembl Gene ID:
ENSAPLG00000002915
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021302
19255354 - 19264070
8717
ENSAPLT00000006300
19248480 - 19260821
12342
ENSAPLT00000002970
19255192 - 19263452
8261