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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_1928163_1940049_R

Intron Information:

Intron Rank:
143205
Intron Class:
major
Intron Phase:
Intron Coordinates:
1928163 - 1940049
Intron Length:
11887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCCATTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATGTGCTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
68.7
0.42
0.9
64.3
36.5
Minor 5ss
29.1
-2.4
3.2
37.3
42.5
Minor BPS
57.6
0.32
2.1
77.95
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017882
1901217 - 1996785
95569
ENSAPLT00000042862
1880652 - 1996785
116134
ENSAPLT00000028627
1924494 - 1999657
75164