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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19287502_19289963_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19287502 - 19289963
Intron Length:
2462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GAATTCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTCAAACT
Flanking Amino Acid:
QRCTSCDSEFGFRIEEDCNR
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
66.5
0.37
1
62.7
43.7
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
58
0.33
2
83.74
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021208
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048001
19279965 - 19293735
13771