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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19290076_19290551_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19290076 - 19290551
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AATCCCACAATA
Flanking Amino Acid:
PCTTHCEPCTTCGSAPVEEK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
84.1
30.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
85.9
0.81
0.7
81.1
30.2
Minor 5ss
45.2
-0.5
2.8
57.4
40.7
Minor BPS
49.1
-0
1.8
62.49
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021208
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048001
19279965 - 19293735
13771