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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19291054_19291196_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19291054 - 19291196
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TGGATTTTAAGA
Flanking Amino Acid:
LVGSGALLIFCKRKRKGLTC
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.7
35.4
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
37.3
-1.4
3.4
59
45.5
Minor BPS
51.6
0.05
1.7
59.83
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021208
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048001
19279965 - 19293735
13771