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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19291259_19291722_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19291259 - 19291722
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CCTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATGTACTCATTT
Flanking Amino Acid:
ENPGETLPETTIPLVYTDVD
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.1
0.81
0.7
83.7
24.4
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
47.9
-0
1.9
67.7
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021208
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048001
19279965 - 19293735
13771