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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19359332_19361506_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19359332 - 19361506
Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ACGCAATGGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACGCAA
U12 Branch Point Sequence:
TGCTACGCAATG
Flanking Amino Acid:
WSCRQSPRQQDRLCLQF
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
53
0.08
1.3
63.6
35.5
Major PPT
49.5
-0
1.1
42.3
41.5
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
42.2
-0.7
2.3
49.16
44.7

Associated Gene:

Gene:
CH25H
Ensembl Gene ID:
ENSAPLG00000002172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002169
19358557 - 19361529
2973