About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19365920_19366499_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19365920 - 19366499
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATAATGA
5'SS Class:
weak_major
3'SS Sequence:
CAACATTGCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTTCCAACA
Flanking Amino Acid:
FIWGLDAPYRIRTVLKPEKI
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.1
0.26
1.1
56.7
36.9
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
59.8
0.22
1
53.5
40.6
Minor 5ss
45.2
-0.5
3
59.3
45.7
Minor BPS
57.2
0.22
1.8
75.85
35.3

Associated Gene:

Gene:
LIPA
Ensembl Gene ID:
ENSAPLG00000018116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037938
19364753 - 19377800
13048