About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19366694_19367427_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19366694 - 19367427
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
KAANMAHYNQSTPPFYKVKE
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80
0.68
0.8
77.6
30.8
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
LIPA
Ensembl Gene ID:
ENSAPLG00000018116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037938
19364753 - 19377800
13048