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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19368661_19369782_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19368661 - 19369782
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTTTT
5'SS Class:
major
3'SS Sequence:
TATCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTAATTATCT
Flanking Amino Acid:
CGFNERNLNMSRVDVYSTHC
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
78.4
31.4
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
82.2
0.73
0.9
76.8
37
Minor 5ss
46.9
-0.3
2.7
63.2
43.8
Minor BPS
54.5
0.22
2.1
79.48
41.8

Associated Gene:

Gene:
LIPA
Ensembl Gene ID:
ENSAPLG00000018116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037938
19364753 - 19377800
13048