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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19369930_19371386_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19369930 - 19371386
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTGTCTTATGT
Flanking Amino Acid:
LGVFPELLLKDMFGKKQFLP
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
55.9
0.26
2
78.81
43.9

Associated Gene:

Gene:
LIPA
Ensembl Gene ID:
ENSAPLG00000018116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037938
19364753 - 19377800
13048