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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_19372189_19372544_R

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
19372189 - 19372544
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTCA
5'SS Class:
weak_minor
3'SS Sequence:
CTTTGCTTTGTAG|C
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GCAGCCATAACA
Flanking Amino Acid:
TVKQDEFWVFSFDEMAKYDI
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
61.2
40.2
Major BPS
71.2
0.53
1
61
37.5
Major PPT
82
0.72
0.8
77.1
31.6
Minor 5ss
70.2
0.68
1.7
74.6
41.5
Minor BPS
54
0.12
1.8
62.04
43.6

Associated Gene:

Gene:
LIPA
Ensembl Gene ID:
ENSAPLG00000018116
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037938
19364753 - 19377800
13048